WEB-based GEne SeT AnaLysis Toolkit
 
Translating gene lists into biological insights...
 


User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID. The second row lists the following statistics:
Finally, genes in the gene set are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:Transcription Target       Name:hsa_V$AP2_Q3       ID:DB_ID:2275
C=249; O=4; E=0.30; R=13.32; rawP=0.0002; adjP=0.0033
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000111642 NA CHD4 chromodomain helicase DNA binding protein 4 1108 ENSG00000111642
2  ENSG00000108509 NA CAMTA2 calmodulin binding transcription activator 2 23125 ENSG00000108509
3  ENSG00000198646 NA NCOA6 nuclear receptor coactivator 6 23054 ENSG00000198646
4  ENSG00000137076 NA TLN1 talin 1 7094 ENSG00000137076


Database:Transcription Target       Name:hsa_GGGCGGR_V$SP1_Q6       ID:DB_ID:2452
C=2891; O=12; E=3.49; R=3.44; rawP=0.0001; adjP=0.0033
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000114867 NA EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 1981 ENSG00000114867
2  ENSG00000100242 NA SUN2 Sad1 and UNC84 domain containing 2 25777 ENSG00000100242
3  ENSG00000198646 NA NCOA6 nuclear receptor coactivator 6 23054 ENSG00000198646
4  ENSG00000137076 NA TLN1 talin 1 7094 ENSG00000137076
5  ENSG00000204469 NA PRRC2A proline-rich coiled-coil 2A 7916 ENSG00000204469
6  ENSG00000176986 NA SEC24C SEC24 family, member C (S. cerevisiae) 9632 ENSG00000176986
7  ENSG00000090615 NA GOLGA3 golgin A3 2802 ENSG00000090615
8  ENSG00000065000 NA AP3D1 adaptor-related protein complex 3, delta 1 subunit 8943 ENSG00000065000
9  ENSG00000111642 NA CHD4 chromodomain helicase DNA binding protein 4 1108 ENSG00000111642
10  ENSG00000110237 NA ARHGEF17 Rho guanine nucleotide exchange factor (GEF) 17 9828 ENSG00000110237
11  ENSG00000106290 NA TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 6878 ENSG00000106290
12  ENSG00000072518 NA MARK2 MAP/microtubule affinity-regulating kinase 2 2011 ENSG00000072518


Database:Transcription Target       Name:hsa_V$MZF1_02       ID:DB_ID:1900
C=231; O=4; E=0.28; R=14.36; rawP=0.0002; adjP=0.0033
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000117713 NA ARID1A AT rich interactive domain 1A (SWI-like) 8289 ENSG00000117713
2  ENSG00000108509 NA CAMTA2 calmodulin binding transcription activator 2 23125 ENSG00000108509
3  ENSG00000198646 NA NCOA6 nuclear receptor coactivator 6 23054 ENSG00000198646
4  ENSG00000204469 NA PRRC2A proline-rich coiled-coil 2A 7916 ENSG00000204469


Database:Transcription Target       Name:hsa_V$SPZ1_01       ID:DB_ID:2103
C=225; O=4; E=0.27; R=14.74; rawP=0.0002; adjP=0.0033
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000111642 NA CHD4 chromodomain helicase DNA binding protein 4 1108 ENSG00000111642
2  ENSG00000114867 NA EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 1981 ENSG00000114867
3  ENSG00000108509 NA CAMTA2 calmodulin binding transcription activator 2 23125 ENSG00000108509
4  ENSG00000125834 NA STK35 serine/threonine kinase 35 140901 ENSG00000125834


Database:Transcription Target       Name:hsa_GGGAGGRR_V$MAZ_Q6       ID:DB_ID:2430
C=2250; O=11; E=2.71; R=4.05; rawP=6.32e-05; adjP=0.0033
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000114867 NA EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 1981 ENSG00000114867
2  ENSG00000108509 NA CAMTA2 calmodulin binding transcription activator 2 23125 ENSG00000108509
3  ENSG00000204469 NA PRRC2A proline-rich coiled-coil 2A 7916 ENSG00000204469
4  ENSG00000176986 NA SEC24C SEC24 family, member C (S. cerevisiae) 9632 ENSG00000176986
5  ENSG00000167522 NA ANKRD11 ankyrin repeat domain 11 29123 ENSG00000167522
6  ENSG00000127616 NA SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 6597 ENSG00000127616
7  ENSG00000065000 NA AP3D1 adaptor-related protein complex 3, delta 1 subunit 8943 ENSG00000065000
8  ENSG00000111642 NA CHD4 chromodomain helicase DNA binding protein 4 1108 ENSG00000111642
9  ENSG00000117713 NA ARID1A AT rich interactive domain 1A (SWI-like) 8289 ENSG00000117713
10  ENSG00000110237 NA ARHGEF17 Rho guanine nucleotide exchange factor (GEF) 17 9828 ENSG00000110237
11  ENSG00000072518 NA MARK2 MAP/microtubule affinity-regulating kinase 2 2011 ENSG00000072518


Database:Transcription Target       Name:hsa_V$YY1_02       ID:DB_ID:1886
C=239; O=4; E=0.29; R=13.88; rawP=0.0002; adjP=0.0033
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000065000 NA AP3D1 adaptor-related protein complex 3, delta 1 subunit 8943 ENSG00000065000
2  ENSG00000111642 NA CHD4 chromodomain helicase DNA binding protein 4 1108 ENSG00000111642
3  ENSG00000114867 NA EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 1981 ENSG00000114867
4  ENSG00000106290 NA TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 6878 ENSG00000106290


Database:Transcription Target       Name:hsa_V$AP2_Q6_01       ID:DB_ID:2292
C=265; O=4; E=0.32; R=12.52; rawP=0.0003; adjP=0.0042
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000111642 NA CHD4 chromodomain helicase DNA binding protein 4 1108 ENSG00000111642
2  ENSG00000117713 NA ARID1A AT rich interactive domain 1A (SWI-like) 8289 ENSG00000117713
3  ENSG00000108509 NA CAMTA2 calmodulin binding transcription activator 2 23125 ENSG00000108509
4  ENSG00000198646 NA NCOA6 nuclear receptor coactivator 6 23054 ENSG00000198646


Database:Transcription Target       Name:hsa_V$AP2_Q6       ID:DB_ID:1978
C=256; O=3; E=0.31; R=9.72; rawP=0.0037; adjP=0.0176
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000117713 NA ARID1A AT rich interactive domain 1A (SWI-like) 8289 ENSG00000117713
2  ENSG00000108509 NA CAMTA2 calmodulin binding transcription activator 2 23125 ENSG00000108509
3  ENSG00000137076 NA TLN1 talin 1 7094 ENSG00000137076


Database:Transcription Target       Name:hsa_V$NFKAPPAB_01       ID:DB_ID:1874
C=250; O=3; E=0.30; R=9.95; rawP=0.0034; adjP=0.0176
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000172534 NA HCFC1 host cell factor C1 (VP16-accessory protein) 3054 ENSG00000172534
2  ENSG00000111642 NA CHD4 chromodomain helicase DNA binding protein 4 1108 ENSG00000111642
3  ENSG00000100242 NA SUN2 Sad1 and UNC84 domain containing 2 25777 ENSG00000100242


Database:Transcription Target       Name:hsa_GCCATNTTG_V$YY1_Q6       ID:DB_ID:2459
C=419; O=4; E=0.51; R=7.92; rawP=0.0016; adjP=0.0176
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000065000 NA AP3D1 adaptor-related protein complex 3, delta 1 subunit 8943 ENSG00000065000
2  ENSG00000110237 NA ARHGEF17 Rho guanine nucleotide exchange factor (GEF) 17 9828 ENSG00000110237
3  ENSG00000198646 NA NCOA6 nuclear receptor coactivator 6 23054 ENSG00000198646
4  ENSG00000106290 NA TAF6 TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 6878 ENSG00000106290




WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).